How has mutation contributed to the evolution of dark fur color in rock pocket mice?

Abstract

Patterns of geographic variation in phenotype or genotype may provide evidence for natural selection. Here, we compare phenotypic variation in color, allele frequencies of a pigmentation gene (the melanocortin-1 receptor, Mc1r), and patterns of neutral mitochondrial DNA (mtDNA) variation in rock pocket mice (Chaetodipus intermedius) across a habitat gradient in southern Arizona. Pocket mice inhabiting volcanic lava have dark coats with unbanded, uniformly melanic hairs, whereas mice from nearby light-colored granitic rocks have light coats with banded hairs. This color polymorphism is a presumed adaptation to avoid predation. Previous work has demonstrated that two Mclr alleles, D and d, differ by four amino acids, and are responsible for the color polymorphism: DD and Dd genotypes are melanic whereas dd genotypes are light colored. To determine the frequency of the two Mclr allelic classes across the dark-co1ored lava and neighboring light-colored granite, we sequenced the Mclr gene in 175 individuals from a 35-km transect in the Pinacate lava region. We also sequenced two neutral mtDNA genes, COIII and ND3, in the same individuals. We found a strong correlation between Mclr allele frequency and habitat color and no correlation between mtDNA markers and habitat color. Using estimates of migration from mtDNA haplotypes between dark- and light-colored sampling sites and Mclr allele frequencies at each site, we estimated selection coefficients against mismatched Mclr alleles, assuming a simple model of migration-selection balance. Habitat-dependent selection appears strong but asymmetric: selection is stronger against light mice on dark rock than against melanic mice on light rock. Together these results suggest that natural selection acts to match pocket mouse coat color to substrate color, despite high levels of gene flow between light and melanic populations.

Journal Information

Evolution, published for the Society for the Study of Evolution, is the premier publication devoted to the study of organic evolution and the integration of the various fields of science concerned with evolution. The journal presents significant and original results that extend our understanding of evolutionary phenomena and processes.

Rights & Usage

This item is part of a JSTOR Collection.
For terms and use, please refer to our Terms and Conditions
Evolution © 2004 Society for the Study of Evolution
Request Permissions

  1. Last updated
  2. Save as PDF
  • Page ID27825
  • This page is a draft and is under active development. 

    A typical rock pocket mouse is about 170 millimeters long from its nose to the end of its tail, shorter than an average pencil. And at just 15 grams, this tiny mouse weighs about as much as a handful of paper clips. You can find populations of rock pocket mice all over the Sonoran Desert in the southwestern United States.

    There are two common varieties—a light-colored variety and a dark-colored variety. There are also two major colors of substrate, or surface materials that make up the desert floor. Most of the landscape consists of light-colored sand and rock, but patches of dark volcanic rocks that formed from cooling lava flows are found, separated by several kilometers of light colored substrate.

    Activity 1

    1. View the images of the rock pocket mouse populations in each location and record the numbers for each color.
      Card 1
      Location A: Number of mice with light-colored fur ______ Dark-colored fur _____
      Location B: Number of mice with light-colored fur ______ Dark-colored fur _____
      Card 2
      Location A: Number of mice with light-colored fur ______ Dark-colored fur _____
      Location B: Number of mice with light-colored fur ______ Dark-colored fur _____
      Card 3
      Location A: Number of mice with light-colored fur ______ Dark-colored fur _____
      Location B: Number of mice with light-colored fur ______ Dark-colored fur _____
      Card 4
      Location A: Number of mice with light-colored fur ______ Dark-colored fur _____
      Location B: Number of mice with light-colored fur ______ Dark-colored fur _____
    2. Arrange the cards in what you think is the correct order from the oldest to the most recent.
      Write the order you chose: _________________________________
    3. What are the two types of substrate that these mice live on? ____________________________________

    Activity 2

    Watch the video at biol.co/rockpock and answer the questions.

    1. How caused the unusual landscape at the Valley of Fire?

    1. flooding
    2. volcanic eruptions
    3. human activities
    4. forest fires

    2. Predators of the pocket mice hunt using what sense?

    1. smell
    2. sound
    3. vision
    4. heat

    3. Why did dark-colored rock pocket mice first appear in a population of light-colored rock pocket mice?

    1. Individuals change color to blend in with the environment.
    2. There is dark lava rock in the area where they live.
    3. They have a genetic mutation that affects their fur color.
    4. Predators eat light-colored rock pocket mice.

    4. Why do dark-colored rock pocket mice on dark lava flows have white bellies?

    1. There is no selection for dark bellies by visual predators.
    2. White bellies protect them from insects found in the desert
    3. There is a reproductive advantage to having a dark belly.
    4. White bellies are an important part of camouflage.

    5. Mutations are always

    1. good
    2. bad
    3. neutral
    4. a change in an organism’s DNA

    6. Dark pocket mice are found in locations that have dark substrate. Genetics revealed what surprising fact about mice in different locations?

    1. they had different mutations
    2. they had the same mutations
    3. they were not related

    7. Now that you have watched the video, go back to your set of cards and arrange them in the order you think they happened, starting with the oldest. You may change your order from your original idea. Once you are satisfied with the order, complete the table.

    Sequence (oldest to newest)

    1st (Oldest)

    2nd

    3rd

    4th (Most recent)

    Location A

    # of Light Mice

    # of Dark Mice

    Location B

    # of Light Mice

    # of Dark mice

    8. How did you revise your sequence from your initial idea? Explain how you decided on the sequence.

    Activity 3: Data Analysis

    Use colored pencils to make a BAR GRAPH showing the numbers and colors of mice at each location. Be sure to label the X and Y axis and each of the bars on the graph.

    How has mutation contributed to the evolution of dark fur color in rock pocket mice?

    Activity 4: Summarize the Data

    1. Compare how the graph looks at Location A to how it looks at Location B. What is the obvious difference between the two?

    2. Explain why a rock pocket mouse color influences its overall fitness. Remember that “fitness” is defined by an organism’s ability to survive and produce offspring.

    3. Explain the presence of dark-colored mice at location A. Why is this phenotype (appearance) not more common in the population at that location?

    4. What is meant by this statement: “Mutation is random, but natural selection is not random.”

    Additional Discussion Questions

    1. Consider the dark and light colored rock pocket mice. Human skin color also comes in different shades. One hypothesis is that dark skin protected humans from intense UV radiation (sunlight). Based on this hypothesis, where do you think more darker skinned people lived? Suggest a reason why light skin may be an advantage for people living in other regions.

    How has mutation contributed to the evolution of dark fur color in rock pocket mice?
    2. What happens to organisms that have adaptations that no longer work for their environment?

    3. Animals develop many types of defenses to avoid being eaten. Camouflage is just one type of defense. What are other types of defenses that prey species might use?

    4. Predators must be able to obtain food and overcome the defenses of prey. How do predator species in the desert survive? What adaptations do they have to make them good hunters?

    How has mutation contributed to the evolution of dark fur color in rock pocket mice?
    5. Sometimes animals have traits that don’t seem to make sense, like the long tail feathers of a peacock. Suggest a reason for traits that don’t help an animal survive. Hint: those features might help them do other things.

    **Other Animals that Model Natural Selection - For discussion in Class

    • Peppered moths in polluted forests
    • Stickleback fish and armored plates
    • Bacteria (antibiotic resistance)
    • Humans and lactase persistence

    Evolution by Natural Selection - VIDA Chart - In the evidence section, write a list of ways in which the rock pocket mouse illustrates the idea posed in the description. Use what you have learned in the activity and the film we watched on rock pocket mice. ~ 5-10 min

    Condition

    Description

    Evidence from Species Studied

    Variation

    Individuals in a population differ in some trait.

    Variations can be physical features, behavior, bodily functions, or resistance to disease.

    Inheritance

    The trait is inherited (passed from parents to offspring).

    The variation comes from random

    mutations and recombination of genes during sexual reproduction.

    Differential Survival and Reproduction


    More offspring are born than can survive.

    Some individuals with a trait are more likely to survive and reproduce than those without the trait.

    Selection depends on the environment. Traits that are beneficial in one environment may not be beneficial in another.

    Adaptation


    The frequency of the trait that helps individuals survive or leave more offspring will increase in the population over time, as will the alleles that affect the trait.

    This process can take many generations and extend over very long periods of time.

    What caused the dark variation in the rock pocket mice?

    The dark-colored mice arose in the population at location A by random mutation. The phenotype did not become more common because it did not afford a selective advantage to the mice.

    How did rock pocket mice evolve to have dark fur when they are living on rock lava flows?

    Why did dark-colored rock pocket mice first appear in a population of light-colored rock pocket mice? Individuals change color to blend in with the environment. There is dark lava rock in the area where they live. They have a genetic mutation that affects their fur color.

    What caused the difference in fur color in the rock pocket mice?

    Fur color is controlled by many genes (4:29). Most genes are identical, but dark and light rock pocket mice differ in one gene (Mc1r; 4:55). Data from Data Set 2 show that a mouse's genotype for the MC1R gene affects their fur color. Mice with two copies of allele 2 have the darkest fur.

    Why are dark

    Rock pocket mice are generally light-colored and live on light-colored rocks. However, populations of dark (melanic) mice are found on dark lava, and this concealing coloration provides protection from avian and mammalian predators.